RNA 3D Hub //

9LMF Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9LMF_0071/A/651:661No text annotation
HL_9LMF_0231/C/651:661No text annotation
HL_9LMF_0311/D/651:661No text annotation
HL_9LMF_0391/E/651:661No text annotation
HL_9LMF_0471/F/651:661No text annotation
HL_9LMF_0551/G/651:661No text annotation
HL_9LMF_0711/I/651:661No text annotation
HL_9LMF_0791/J/651:661No text annotation

Problematic loops

#loop idProblemSequence
HL_9LMF_001No text annotation
HL_9LMF_002No text annotation
HL_9LMF_003No text annotation
HL_9LMF_004GNRA
HL_9LMF_005No text annotation
HL_9LMF_006GNRA
HL_9LMF_008No text annotation
HL_9LMF_009No text annotation
HL_9LMF_010No text annotation
HL_9LMF_011No text annotation
HL_9LMF_012GNRA
HL_9LMF_013No text annotation
HL_9LMF_014GNRA
HL_9LMF_015No text annotation
HL_9LMF_016No text annotation
HL_9LMF_017No text annotation
HL_9LMF_018No text annotation
HL_9LMF_019No text annotation
HL_9LMF_020GNRA
HL_9LMF_021No text annotation
HL_9LMF_022GNRA
HL_9LMF_024No text annotation
HL_9LMF_025No text annotation
HL_9LMF_026No text annotation
HL_9LMF_027No text annotation
HL_9LMF_028GNRA
HL_9LMF_029No text annotation
HL_9LMF_030GNRA
HL_9LMF_032No text annotation
HL_9LMF_033No text annotation
HL_9LMF_034No text annotation
HL_9LMF_035No text annotation
HL_9LMF_036GNRA
HL_9LMF_037No text annotation
HL_9LMF_038GNRA
HL_9LMF_040No text annotation
HL_9LMF_041No text annotation
HL_9LMF_042No text annotation
HL_9LMF_043No text annotation
HL_9LMF_044GNRA
HL_9LMF_045No text annotation
HL_9LMF_046GNRA
HL_9LMF_048No text annotation
HL_9LMF_049No text annotation
HL_9LMF_050No text annotation
HL_9LMF_051No text annotation
HL_9LMF_052GNRA
HL_9LMF_053No text annotation
HL_9LMF_054GNRA
HL_9LMF_056No text annotation
HL_9LMF_057No text annotation
HL_9LMF_058No text annotation
HL_9LMF_059No text annotation
HL_9LMF_060GNRA
HL_9LMF_061No text annotation
HL_9LMF_062GNRA
HL_9LMF_063No text annotation
HL_9LMF_064No text annotation
HL_9LMF_065No text annotation
HL_9LMF_066No text annotation
HL_9LMF_067No text annotation
HL_9LMF_068GNRA
HL_9LMF_069No text annotation
HL_9LMF_070GNRA
HL_9LMF_072No text annotation
HL_9LMF_073No text annotation
HL_9LMF_074No text annotation
HL_9LMF_075No text annotation
HL_9LMF_076GNRA
HL_9LMF_077No text annotation
HL_9LMF_078GNRA
HL_9LMF_080No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9LMF_0011/A/333:336,
1/A/366:378		No text annotation
IL_9LMF_0041/A/514:522,
1/A/557:564		No text annotation
IL_9LMF_0051/A/522:527,
1/A/552:557		No text annotation
IL_9LMF_0081/B/337:342,
1/B/362:365		No text annotation
IL_9LMF_0101/B/514:522,
1/B/557:564		No text annotation
IL_9LMF_0111/B/522:527,
1/B/552:557		No text annotation
IL_9LMF_0141/C/337:342,
1/C/362:365		No text annotation
IL_9LMF_0161/C/514:522,
1/C/557:564		No text annotation
IL_9LMF_0171/C/522:527,
1/C/552:557		No text annotation
IL_9LMF_0221/D/514:522,
1/D/557:564		No text annotation
IL_9LMF_0231/D/522:527,
1/D/552:557		No text annotation
IL_9LMF_0281/E/514:522,
1/E/557:564		No text annotation
IL_9LMF_0291/E/522:527,
1/E/552:557		No text annotation
IL_9LMF_0321/F/337:342,
1/F/362:365		No text annotation
IL_9LMF_0341/F/514:522,
1/F/557:564		No text annotation
IL_9LMF_0351/F/522:527,
1/F/552:557		No text annotation
IL_9LMF_0361/F/528:531,
1/F/548:551		Tandem non-canonical cWW pairs
geometric
IL_2PN3_004
IL_71194.4
IL_9LMF_0381/G/337:342,
1/G/362:365		No text annotation
IL_9LMF_0401/G/514:522,
1/G/557:564		No text annotation
IL_9LMF_0411/G/522:527,
1/G/552:557		No text annotation
IL_9LMF_0441/H/337:342,
1/H/362:365		No text annotation
IL_9LMF_0461/H/514:522,
1/H/557:564		No text annotation
IL_9LMF_0471/H/522:527,
1/H/552:557		No text annotation
IL_9LMF_0521/I/514:522,
1/I/557:564		No text annotation
IL_9LMF_0531/I/522:527,
1/I/552:557		No text annotation
IL_9LMF_0551/J/333:336,
1/J/366:378		No text annotation
IL_9LMF_0561/J/337:342,
1/J/362:365		No text annotation
IL_9LMF_0581/J/514:522,
1/J/557:564		No text annotation
IL_9LMF_0591/J/522:527,
1/J/552:557		No text annotation

Problematic loops

#loop idProblemSequence
IL_9LMF_002No text annotation
IL_9LMF_003Double sheared
IL_9LMF_006Tandem non-canonical cWW pairs
IL_9LMF_007No text annotation
IL_9LMF_009Double sheared
IL_9LMF_012Tandem non-canonical cWW pairs
IL_9LMF_013No text annotation
IL_9LMF_015Double sheared
IL_9LMF_018Tandem non-canonical cWW pairs
IL_9LMF_019No text annotation
IL_9LMF_020No text annotation
IL_9LMF_021Double sheared
IL_9LMF_024Tandem non-canonical cWW pairs
IL_9LMF_025No text annotation
IL_9LMF_026No text annotation
IL_9LMF_027Double sheared
IL_9LMF_030Tandem non-canonical cWW pairs
IL_9LMF_031No text annotation
IL_9LMF_033Double sheared
IL_9LMF_037No text annotation
IL_9LMF_039Double sheared
IL_9LMF_042Tandem non-canonical cWW pairs
IL_9LMF_043No text annotation
IL_9LMF_045Double sheared
IL_9LMF_048Tandem non-canonical cWW pairs
IL_9LMF_049No text annotation
IL_9LMF_050No text annotation
IL_9LMF_051Double sheared
IL_9LMF_054Tandem non-canonical cWW pairs
IL_9LMF_057Double sheared
IL_9LMF_060Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9LMF_0011/A/620:623,
1/A/638:646,
1/A/666:672		No text annotation
J3_9LMF_0021/B/620:623,
1/B/638:646,
1/B/666:672		No text annotation
J3_9LMF_0061/F/620:623,
1/F/638:646,
1/F/666:672		No text annotation
J3_9LMF_0081/H/620:623,
1/H/638:646,
1/H/666:672		No text annotation
J3_9LMF_0091/I/620:623,
1/I/638:646,
1/I/666:672		No text annotation
J4_9LMF_0011/A/453:467,
1/A/481:482,
1/A/508:510,
1/A/568:574		No text annotation
J4_9LMF_0021/B/453:467,
1/B/481:482,
1/B/508:510,
1/B/568:574		No text annotation
J4_9LMF_0031/C/453:467,
1/C/481:482,
1/C/508:510,
1/C/568:574		No text annotation
J4_9LMF_0041/D/453:467,
1/D/481:482,
1/D/508:510,
1/D/568:574		No text annotation
J4_9LMF_0051/E/453:467,
1/E/481:482,
1/E/508:510,
1/E/568:574		No text annotation
J4_9LMF_0061/F/453:467,
1/F/481:482,
1/F/508:510,
1/F/568:574		No text annotation
J4_9LMF_0071/G/453:467,
1/G/481:482,
1/G/508:510,
1/G/568:574		No text annotation
J4_9LMF_0081/H/453:467,
1/H/481:482,
1/H/508:510,
1/H/568:574		No text annotation
J4_9LMF_0091/I/453:467,
1/I/481:482,
1/I/508:510,
1/I/568:574		No text annotation
J4_9LMF_0101/J/453:467,
1/J/481:482,
1/J/508:510,
1/J/568:574		No text annotation

Problematic loops

#loop idProblemSequence
J3_9LMF_003No text annotation
J3_9LMF_004No text annotation
J3_9LMF_005No text annotation
J3_9LMF_007No text annotation
J3_9LMF_010No text annotation

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